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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagaaaaatcacgtctctcatcagcttcttccataaaaccaatcactgacccaatccaatttcatctggtgtcacagCAGCAGCAGCAACCGCAAGAGGACGCTAAACTTTGACGCAGAAGCAGGGATGGTCAGCGATTCCATGGTAGCAAATAGCCTTAACCTCCAAAACCAAAAT

Basic information

species Arabidopsis thaliana
transcript AT3G12280.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125029119|gb|EL101388.1|EL101388
EST:     TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAA                         CAGCAGCAGCAACCG
genomic: TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaa ... ggtgtcacagCAGCAGCAGCAACCG
EST: gi|124779242|gb|EH869185.1|EH869185
EST:     TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAA                         CAGCAGCAGCAACCG
genomic: TACCAGAGCCCTTCAAAGGACCTATCTGCCATCAACAACCGCTTGAACAAgtaagtagaa ... ggtgtcacagCAGCAGCAGCAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttcttccataaaaccaatcactgacccaatccaatttcatctggtgtcacagCAGCAGCAGCAACCGCAAGAGGACGCTAAACTTTGACGCAGAAGCAGGGATGGTCAGCGATTCCATGGTAGCAAATAGCCTTAACCTCCAAAACCAAAAT
                     cactgac  putative branch site (score: 2)
                                   aatttcat  TA-rich tract