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gtagtatctctatccttcgtttaccatggtgatccttcaatattccaccaacaactccacaacaccttacctacatgctaggggcttatgaatctcttgcgaatcaattttttatttacttgcgaatccgatgatggcttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAG
species | Arabidopsis thaliana |
transcript | AT2G44350.2 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCCTGGAAAG GTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACEST: gi|124783808|gb|EH873612.1|EH873612
genomic: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGgtagtatctc ... cttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAAC
EST: CCTCCTGTTCTCACTGAGCTTGGAAAG GTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACEST: gi|124736509|gb|EH827911.1|EH827911
genomic: CCTCCTGTTCTCACTGAGCTTGGAAAGgtagtatctc ... cttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAAC
EST: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAG GTGAAGAACCCGTGGCCAAATGTTGATGEST: gi|116453292|gb|EG495884.1|EG495884
genomic: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGgtagtatctc ... cttgttacagGTGAAGAACCCGTGGCCAAATGTTGATG
EST: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAG GTGAAGAACCCTTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAAC
genomic: TGTCAAAGCTTTATGAAGTTGTGCCTCCTGTTCTCACTGAGCTTGGAAAGgtagtatctc ... cttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAAC
tctcttgcgaatcaattttttatttacttgcgaatccgatgatggcttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAG
aatcaattttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtatctctatccttcgtttaccatggtgatccttcaatattccaccaacaactccacaacaccttacctacatgctaggggcttatgaatctcttgcgaatcaattttttatttacttgcgaatccgatgatggcttgttacagGTGAAGAACCCGTGGCCAAATGTTGATGCTCACAGTGGGGTCTTGCTGAACCACTATGGTCTAACCGAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG