1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaattttcaaaccttgatagagtcaaatgcaaaacatacactttccatgagttctctgcaactacctagaggtgtttatagagtcttaaaaatctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCATTGTCTCTCTGTCATTAATGAAGAGCTGGGAGACTTAAATACAGGTTAAG
species | Arabidopsis thaliana |
transcript | AT2G37290.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAAAACATTTAG ATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCATEST: gi|116398845|gb|EG441437.1|EG441437
genomic: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAAAACATTTAGgtaattttca ... tctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCAT
EST: ATAACTGCAAAACATTTAG ATTC-TGAAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCAEST: gi|116398852|gb|EG441444.1|EG441444
genomic: ATAACTGCAAAACATTTAGgtaattttca ... tctttttcagATTCTTG-AAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCA
EST: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAGAACATTTAG ATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCATEST: gi|116398847|gb|EG441439.1|EG441439
genomic: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAAAACATTTAGgtaattttca ... tctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCAT
EST: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAAAACATTTAG ATTCTGGAAAATGTTCTAAGGATC-TGAAAGCTGCTAAAGATCTTCTTGCAEST: gi|116398849|gb|EG441441.1|EG441441
genomic: CCGGAGACAAGACGCTAGCTGATAAAGAGTCATAACTGCAAAACATTTAGgtaattttca ... tctttttcagATTCTTGAAAATGTTCTTAGGATCTTG-AAGCTGCTTAAGATCTTCTTGCA
EST: AAGAGTCATAACTGCAAAACATTTAG ATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCAT
genomic: AAGAGTCATAACTGCAAAACATTTAGgtaattttca ... tctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCAT
tgagttctctgcaactacctagaggtgtttatagagtcttaaaaatctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCATTGTCTCTCTGTCATTAATGAAGAGCTGGGAGACTTAAATACAGGTTAAG
tctttttc CT-rich tract
tcttaaaaatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttcaaaccttgatagagtcaaatgcaaaacatacactttccatgagttctctgcaactacctagaggtgtttatagagtcttaaaaatctttttcagATTCTTGAAAATGTTCTTAGGATCTTGAAGCTGCTTAAGATCTTCTTGCATTGTCTCTCTGTCATTAATGAAGAGCTGGGAGACTTAAATACAGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT