Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacaattgggtttgtacaaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT

Basic information

species Arabidopsis thaliana
transcript AT2G16950.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GRMZM2G376731_T01 (Zea mays), 3'ss of exon 17
gta-taacaattgggtttgtacaaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagttttt---------ttctttgcctac---ttaagtttcct---ctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
||  |||||  |       | |     |  | |  |  | ||   |      ||    | ||  |||   | | || |  |   ||||   || |  | ||         ||| |||   |     ||| | | ||    |   |||||| |    ||||| || ||  | ||||| ||  || |  | |||||||| |||||||| ||||| || ||||||||||||||| | || || ||||||||||
gtgctaacatcttcacaaatccttcactgttttttttgtatatcatgcaaaactattttggttctttcagagttcagactcct-tggtgccatgatctcttgtatgccaattccttgtgaagatactaattcttctaagttgctatgcagGCAAAATATCTAGATATATTTATGCCGCCTTTGATCACGAAGTGGCAGCAACTTTCCAATTCTGACAAAGATCTATTTCCACTCCTTGAATGCTTTACAT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA20G24040.1 (Glycine max), 3'ss of exon 17
--------------------------------gtataacaattgggtttgtac--aaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
                                ||| ||||||     || | |   |   ||| ||  | || |      |  |  ||    |   ||| | |  || |||| || |   ||  ||   || |||||||  ||||||  |  |  || | |  ||||||||| ||||||||| ||||| ||||| ||| |  |||  |||||||| ||||||||||||||||| |||||||| |||||  | || || ||||||||||
gtatgctatttttattactaatccattgcatggtagaacaatcatccttcttcctcaaactaaacttttatttttttcccaagttatttttcatgatttatta--tcaatatcctcgaaataaaatt--ttattttcttcacctactgtatctctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCGCTCCTGGAATGCTTTACAT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 17
---------------------------------gtataacaattgggtttgtaca--aggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
                                 ||| |||||      || | |   |   ||| ||  |||| |      |  |  ||| |  |  || ||   ||   | |    || ||   | |||   ||| |||  ||||||  |  |  || | |  ||||||||| ||||||||| ||||| ||||| ||| |  |||  || ||||| ||||||||||||||||| |||||||| |||||| | || || ||||||||||
gtatgctactttttattagtaatccattgcatggtagaacaaacatccttcttcctcaaactaaacttttcttttttccccaagttattgtcatgatttattgtcattattctctccgtcgtttcaaaagacattt-cttgacctactgta--tctctttgttttgcagCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAATGGCAGCAACTTTCAAATTCAGACAAAGATCTTTTTCCACTCCTGGAATGCTTTACAT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 17
gtataacaattgggtttgtacaaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
                                                             ||  || || ||   || |||    ||   ||| |    | || |||  | | |   |     | |  || ||||  | |||||||| ||||| ||||| ||| || | ||||||||||| |||||||| ||||||||||||||  | || ||| |||| |||||||||||||
-------------------------------------------------------------gtactttaattc---atgctgtgattatgttaaatacaatgctctgctaattcagtatcttgtttttttgtagCCCACCTATCTTGATATTCTAATGCCGCCATTGATCGCAAAGTGGCAGCAACTTTCTAATTCAGATAAAGACATTTTCCCACTGCTGGAGTGCTTTACAT

upper sequence: AT2G16950.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 3'ss of exon 17
-------gtataacaattgggtttgtacaaggttaatctgatcttgtaaatttagctccttgactagtgtttttcaaatccatatactggtggtagtataagtttttttctttgcctacttaagtttcc--------tctctc--------atgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
        | | |   |||||  ||     |  |    |  ||||     |   |||||||||   |    |   |     | | | || | |  || |  ||| ||  |  |    ||  ||| | |         ||| |         |  ||| |    || ||||| ||||||||||||||| |  ||||||||||||| | | |||| |||||||| ||||| || |||||| ||||||||||||||||||
gtaagccttcttatttttgggcatgagttggtgtttgtttttctttcctttggtgctccttgatgtggaaatcagagggggacagaatgcttggtgtttttgttcttcacgatcaggacacaagctactaacgcccatcttttgattctatacacagTCCAGATACCTTGATATTCTGATGCCTCCATTAATTGCAAAGTGGCAGCTAGTTTCCAATTCAGACAAAGACCTCTTTCCACTGCTAGAGTGCTTTACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125176870|gb|EL196171.1|EL196171
EST:     TGATGCTATTGGAACACTGGCAGATTCAGTTAGAGAAGAGTTGAACAAG                         CCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAA
genomic: TGATGCTATTGGAACACTGGCAGATTCAGTTAGAGAAGAGTTGAACAAGgtataacaat ... tctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtggtagtataagtttttttctttgcctacttaagtttcctctctcatgcagCCTGCTTATCTTGAGATTCTGATGCCTCCACTGGTTGCAAAGTGGCAACAACTTTCAAATTCAGATAAAGATCTATTTCCATTGCTAGAGTGCTTTACAT
                                      tttcctctctcatgc  CT-rich tract
          tataagtttttttctt  TA-rich tract