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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagattcccagataccttaattactcccaaatttacgcataatcgatctttgtcatgtttattaacaccaattgttggtgtctgattttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCATCACCAACTGTTATTACATAAGACAGCTTTCAGAAGACGCTGTCTCCAA

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70730.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 17
---------------gtcagatt--cccagataccttaattactc-ccaaatttacgcataatcgatctttgtcatgtttattaacaccaattgttggtgtctgattttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCATCACCAACTGTTATTACATAAGACAGCTTTCAGAAGACGCTGTCTCCAA-----
                  | |||  |   |     |  |    |  || |             |  | ||  |||   ||     || ||| | |     |||| |||   ||||||||||||||| | |||||||| || |||||||||| ||| ||||||||  | || || || || ||||||   |  |||||  || |  |  ||  ||     
gtaagacatccgcgctgtatattggctttgccttttggaccgttttccgagcaagtttgcggacctttttcttcagactttaattcagcaaatctgaccatctgctttatccagGTTGATGTTGCACTGAAGCTGTCAAAGATGCAAGAGTACACTGGCCGATCTGCTCCCACCGTCATCACATAA---ACTTTTCAAGAGCCATT--CTAGAATGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799156|gb|AU230446.1|AU230446
EST:     AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTG                         GTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA
genomic: AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTGgtcagattcc ... attttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA
EST: gi|116415466|gb|EG458058.1|EG458058
EST:     AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTG                         GTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCCCCGGCCGATCA
genomic: AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTGgtcagattcc ... attttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA
EST: gi|86084572|gb|DR380331.1|DR380331
EST:     AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTG                         GTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA
genomic: AGGACGCCTCAAAGATCGGCCGAGATTCTCAGGATGCTCTTGGTCCCCTGgtcagattcc ... attttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcgatctttgtcatgtttattaacaccaattgttggtgtctgattttcacagGTTGATGTTGCATTAAAGCTGTCGAAAATGCAAGAGTTCACCGGCCGATCATCACCAACTGTTATTACATAAGACAGCTTTCAGAAGACGCTGTCTCCAA
                                              ttttcac  CT-rich tract
               atgtttattaa  TA-rich tract