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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttatactttcggctcctcttatatcttcatgtcacacatatctctctttttcgagaaagtaaaacaaatcgagaactgcagGTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCACTACTGACAAG

Basic information

species Arabidopsis thaliana
transcript AT1G61210.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402379|gb|EG444971.1|EG444971
EST:     ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAG                         GTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGAT
genomic: ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAGgtacttatac ... agaactgcagGTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGAT
EST: gi|116416015|gb|EG458607.1|EG458607
EST:     ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAG                         GTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGAT
genomic: ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAGgtacttatac ... agaactgcagGTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGAT
EST: gi|19878718|gb|AU239549.1|AU239549
EST:     ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAG                         GTTACAGATCTGCCANAGCTGTTTCTGCGGAATTGCANAAGGNTTCA
genomic: ACTGTTTCAGCACGACGAGTTGTCGGCGTTGATCTTCATGCAGAGGAAAGgtacttatac ... agaactgcagGTTACAGATCTGCCAAAGCTGTT-CTGCGGAATTGCAAAAGG-TTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgtcacacatatctctctttttcgagaaagtaaaacaaatcgagaactgcagGTTACAGATCTGCCAAAGCTGTTCTGCGGAATTGCAAAAGGTTCAGAAGATTCTTCCACTACTGACAAG
                             aaagtaaaacaaat  TA-rich tract