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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagattcacaacagttatcagtcttcatttaactatctttttcatacgctctgattcagtaatgtccattcatttgatatcacagGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGGGTACAAAG

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084239|gb|DR379998.1|DR379998
EST:     TGGACCATCTGGTATAAACTGGATGGTCTCCAGCTTTCTCAAAAGAGAAG                         GAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGGGTACAAAG
genomic: TGGACCATCTGGTATAAACTGGATGGTCTCCAGCTTTCTCAAAAGAGAAGgtatatagat ... gatatcacagGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGGGTACAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactatctttttcatacgctctgattcagtaatgtccattcatttgatatcacagGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGGGTACAAAG
       tttttcata  TA-rich tract