Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatagctctaaaaactcagtggcaccattttacatgatatatcagaacacaagacatgatatagagtagagtttctgggatcaattttgaggtttagaaatcaagaatgaatcagtaacctagtgtgatttttttctaactcagGTTACATATGAGACGACTGGATTTCTAGAGAAGAACCGAGATTTGTTGCATTCAGATTCTATTCAACTTTTGTCGTCTTGCTCTTGCCACCTCCCTCAGG

Basic information

species Arabidopsis thaliana
transcript AT1G50360.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50360.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 16
gtaatagctctaaaaactcagtggcaccattttacatgatatatcagaacacaagacatgatatagagtagagtttctgggatcaattttgaggtttagaaatcaagaatgaatcagtaacctagtgtgatttttttctaactcagGTTACATATGAGACGACTGGATTTCTAGAGAAGAACCGAGATTTGTTGCATTCAGATTCTATTCAACTTTTGTCGTCTTGCTCTTGCCACCTCCCTCAGG
                                          |   |   | |  || || | |    |  | ||| | | |  ||  ||    | | |       |  ||  | |       | |||     |||    | |||||| |  ||||| || ||||| ||||||||||||||| |||||||||| || |  ||||| ||||||||| | || |||||| | ||||| || || ||  
-----------------------------------------aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggtt-----ggctgccttacattttgattgttccactttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtttagaaatcaagaatgaatcagtaacctagtgtgatttttttctaactcagGTTACATATGAGACGACTGGATTTCTAGAGAAGAACCGAGATTTGTTGCATTCAGATTCTATTCAACTTTTGTCGTCTTGCTCTTGCCACCTCCCTCAGG
                                            ttctaac  putative branch site (score: 1)
                                       tttttttctaactc  CT-rich tract
                                    tgatttttttctaa  TA-rich tract