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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattacatctatcttctttttttgcttttttcccctttattcatctttcccaattgataaagcagtaaatagatttcaattttttctttaaccttctctttcttttgtgtaacttccagTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGCGGTAGTGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCAGCAGG

Basic information

species Arabidopsis thaliana
transcript AT1G23900.1
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425056|gb|EG467648.1|EG467648
EST:     TATCTCCCAATACTTTCACAGATTTTATATTCCAGGCTGCTGTTCCAAAG                         TTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGC
genomic: TATCTCCCAATACTTTCACAGATTTTATATTCCAGGCTGCTGTTCCAAAGgtaattacat ... taacttccagTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGC
EST: gi|116419286|gb|EG461878.1|EG461878
EST:     TATCTCCCAATACTTTCACAGATTTTATATTCCAGGCTGCTGTTCCAAAG                         TTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGC
genomic: TATCTCCCAATACTTTCACAGATTTTATATTCCAGGCTGCTGTTCCAAAGgtaattacat ... taacttccagTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatagatttcaattttttctttaaccttctctttcttttgtgtaacttccagTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAACACACTCCTGGCAAGCGGTAGTGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCAGCAGG
                                          gtgtaac  putative branch site (score: 3)
 ttttttctttaacctt  CT-rich tract
 tagatttcaatttttt  TA-rich tract