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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaatttagataaagaagatcgaaattcttgttttgaaagcataatgaattaatgtacatatctctggtttctaatccacagGATCACGCGTAAAGAAGCTTGAAAAGAAACCTTTGACACTGCGAATGGTCGATATGGACCAGTTGGATCGGTGATGTATTTCTTCTTCTTATTCATTGTT

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 17
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164234929|gb|ES053294.1|ES053294
EST:     TCACTGAGGCCCTTGGAATCTACTGCTTTAG                         GATCACGCGTAAAGAAGCTTGAAAAGAAACCTTTGACACTGCGAATGGTCG
genomic: TCACTGAGGCCCTTGGAATCTACTGCTTTAGgtgaaaattt ... taatccacagGATCACGCGTAAAGAAGCTTGAAAAGAAACCTTTGACACTGCGAATGGTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttttgaaagcataatgaattaatgtacatatctctggtttctaatccacagGATCACGCGTAAAGAAGCTTGAAAAGAAACCTTTGACACTGCGAATGGTCGATATGGACCAGTTGGATCGGTGATGTATTTCTTCTTCTTATTCATTGTT
                                          ttctaat  putative branch site (score: 2)
                                         tttct  CT-rich tract
              ataatgaattaatgta  TA-rich tract