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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaatcgcaattggccttgttgattttcctatttgcacaggacactacttttgactttgatgactttttttcatttctggtatttgccagGAACTCATCGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCATGTATGAACGACCCAAGCCCAAGTTTCCACGGATCAACCTCACTTTCAT

Basic information

species Arabidopsis thaliana
transcript AT1G12360.1
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: LOC_Os02g25580.2 (Oryza sativa), 3'ss of exon 13
---------gtaccaatcgcaattggccttgttgattttcctatttgcacaggacactacttttgactttgatg-actttttttcatttctggtatttgc-cagGAACTCATCGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCATGTATGAACGACCCAAGCCCAAGTTTCCACGGATCAACCTCACTTTCAT
         ||  | |  || |  ||   |  | ||     |||||      | |   |  |||||||   ||  ||  |  || | || |    |||   |||||  | || || || |||||||| |||||||| |||||||| || | |   || ||||||||||| |||||||||||||||||     |          |
attggcatagtctccaaagcga--ggatgtactaatgcatatattttgttttgccttca--tttgactaaaatatacgatagttaacttgtaccttttatacagGACTTGATTGAGAAGCTTAGCAAGGGAGAATTACCAAAAGACGAATACTATTGCATGAACGACCCTAGCCCAAGTTTCCACGGTCTGCCAATGAGCAGCT

upper sequence: AT1G12360.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 17
--gtacca-atcgcaattggccttgttgattttcctatttgcacaggacactacttttgactttgatgactttttttc----atttctggtatttgccagGAACTCATCGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCATGTATGAACGACCCAAGCCCAAGTTTCCACGGATCAACCTCACTTTCAT
    |  | ||   ||| |     ||||  ||     | |||| |            ||  | |||||| | | || |    |     |  || |  |||||||| || ||||||||||||||||| ||| | |||||  | ||||  ||||||||||| ||||||||  ||  |||    ||  |  |   |  | |||
cctaattatataataatggaatgagttgtcttattattctgcatatcttttctaccctgtatgtgatgagtgtattaccaaaaccgacgtcatctttcagGAACTTATTGAAAAACTTAGCAAAGGGGAACTTCCAAAGAATGATTATCCATGTATGAATGACCCAAGTGCATCTTTTGGTGGGCCCTCGCAAGCTGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaggacactacttttgactttgatgactttttttcatttctggtatttgccagGAACTCATCGAAAAACTTAGCAAAGGAGAATTGCCAAAAGAGGATTTCCCATGTATGAACGACCCAAGCCCAAGTTTCCACGGATCAACCTCACTTTCAT
                           actttttttcattt  TA-rich tract