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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattactaactactactatattgtgttttcatacaatagtttcaatatttgttgcatttcattctcaattgattccaaattatgatcagGTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTTAACTCTTATATAATC

Basic information

species Arabidopsis thaliana
transcript AT5G65620.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125275701|gb|EL289786.1|EL289786
EST:     GATTCAGAAACACCATACTTGCACTTGGAGGAGGGAAAGCGCCTCTTAAG                         GTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTT
genomic: GATTCAGAAACACCATACTTGCACTTGGAGGAGGGAAAGCGCCTCTTAAGgtattactaa ... ttatgatcagGTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTT
EST: gi|124902467|gb|EH976547.1|EH976547
EST:     AAAGCGCCTCTTAAG                         GTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTTCTCAGA
genomic: AAAGCGCCTCTTAAGgtattactaa ... ttatgatcagGTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTTCTCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagtttcaatatttgttgcatttcattctcaattgattccaaattatgatcagGTGTTTGTTGAGTTTAGAGGACGAGAACCTTCACCCGAGCCTCTTCTCAGACACAATGGACTCTTGGCTGCCTCTGCTTCTGCTTAACTCTTATATAATC
                                aattgat  putative branch site (score: 4)
     tttcaatatttgtt  TA-rich tract