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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaaccaaaccgtaaaaacatctttcaaaacttttgtttcttgatttgtggcatcataataaaaactatgtttgatttttaattcagCCTTGCTTAGGCGGTGACGCAAAGACGCTAATGTTTGTGAACATTGCACCGGAATCTTCTTCAACCGGTGAGTCTCTCTGCTCTCTTAGATTCGCAGCGA

Basic information

species Arabidopsis thaliana
transcript AT5G54670.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164174254|gb|EL996416.1|EL996416
EST:     AAAGCTCACATATCTTCTCCAG                         CCTTGCTTAGGCGGTGACGCAAAGACGCTAATGTTTGTGAACATTGCACCG
genomic: AAAGCTCACATATCTTCTCCAGgtaccaaacc ... tttaattcagCCTTGCTTAGGCGGTGACGCAAAGACGCTAATGTTTGTGAACATTGCACCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttcttgatttgtggcatcataataaaaactatgtttgatttttaattcagCCTTGCTTAGGCGGTGACGCAAAGACGCTAATGTTTGTGAACATTGCACCGGAATCTTCTTCAACCGGTGAGTCTCTCTGCTCTCTTAGATTCGCAGCGA
                                            ttttaat  putative branch site (score: 3)
                                           ttttt  CT-rich tract
                    atcataataaaaacta  TA-rich tract