1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgtgccaagtttacagatagtcgcattttttactggatcaaaattgtttaatctcacttcgattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGCTAACCGCAGAGGACATAAAGCGTATTCTCCTTCCAAAGCAGGAAGGCG
species | Arabidopsis thaliana |
transcript | AT5G53170.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGG CATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGEST: gi|116396094|gb|EG438686.1|EG438686
genomic: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGGgtttgtgcca ... gtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACG
EST: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGG CATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGEST: gi|116462972|gb|EG505564.1|EG505564
genomic: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGGgtttgtgcca ... gtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACG
EST: TGAAGCTTTTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGG CATGAGAAGCAGCTACACACGTTAGCAAACGCACTTTTAGAGTATGAAACGEST: gi|164034752|gb|ES117702.1|ES117702
genomic: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGGgtttgtgcca ... gtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACG
EST: GAGAGTGAAATCTCTCTTGAAACGG CATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGEST: gi|86036171|gb|DR331924.1|DR331924
genomic: GAGAGTGAAATCTCTCTTGAAACGGgtttgtgcca ... gtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACG
EST: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGG CATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCT
genomic: TGAAGCTTCTTAGAGAAGCATATGAGAGAGTGAAATCTCTCTTGAAACGGgtttgtgcca ... gtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCT
tctcacttcgattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGCTAACCGCAGAGGACATAAAGCGTATTCTCCTTCCAAAGCAGGAAGGCG
tgtttcccc CT-rich tract
attttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgccaagtttacagatagtcgcattttttactggatcaaaattgtttaatctcacttcgattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttccccagCATGAGAAGCAGCTACACACGTTAGCAAACGCACTTCTAGAGTATGAAACGCTAACCGCAGAGGACATAAAGCGTATTCTCCTTCCAAAGCAGGAAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA