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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgatgacttgcttcagttctcgactagtttttttattgcatttcactaattagtgaaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAATAGAAACAAATCCAAATCTTATAATAGCTCCAGTTAACTACGAAGGG

Basic information

species Arabidopsis thaliana
transcript AT5G17530.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164226964|gb|ES198456.1|ES198456
EST:     CGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: CGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|86075023|gb|DR370780.1|DR370780
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|116416532|gb|EG459124.1|EG459124
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|116416533|gb|EG459125.1|EG459125
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|116424751|gb|EG467343.1|EG467343
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|125210207|gb|EL225161.1|EL225161
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATG
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATG
EST: gi|86023635|gb|DR319388.1|DR319388
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|164219527|gb|ES151441.1|ES151441
EST:     CACCCTGACCTTGAAGGAAG                         TGATTTCCGGG-GTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: CACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
EST: gi|86023634|gb|DR319387.1|DR319387
EST:     TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAG                         TGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT
genomic: TTAGAACTGAGGCTTAAAATCGACAAGAATCACCCTGACCTTGAAGGAAGgtatgattga ... aaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagttctcgactagtttttttattgcatttcactaattagtgaaaattgtagTGATTTCCGGGAGTATGGAGAGAAGGTCCTGCAACACGTGTCGAACTCAATAGAAACAAATCCAAATCTTATAATAGCTCCAGTTAACTACGAAGGG
                                 cactaat  putative branch site (score: 2)
                 tttttttattgcattt  TA-rich tract