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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatttaccttaccaaattccttttagccaagaggattatccataagacaactcttacaattggttcttattttcagTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGTGGGAAGCCTCCAGGTCCAGCCAGTAAGTAGTGACCTTGGGGACCTCGGG

Basic information

species Arabidopsis thaliana
transcript AT5G13260.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125254143|gb|EL268228.1|EL268228
EST:     GAGCGCACATTCTCCATCTTCACATGACGCCATGGAAG                         TTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGT
genomic: GAGCGCACATTCTCCATCTTCACATGACGCCATGGAAGgtacaattta ... ttattttcagTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGT
EST: gi|19740667|gb|AU226020.1|AU226020
EST:     TTGGATCAGCAGGAGCGCACATTCTCCATCTTCACATGACGCCATGGAAG                         TTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGT
genomic: TTGGATCAGCAGGAGCGCACATTCTCCATCTTCACATGACGCCATGGAAGgtacaattta ... ttattttcagTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagccaagaggattatccataagacaactcttacaattggttcttattttcagTTGAGCAAGGACTAACAGAGCTAAGAAAGCTGCGGATAGAACGTAGATTGTGGGAAGCCTCCAGGTCCAGCCAGTAAGTAGTGACCTTGGGGACCTCGGG
                             ctcttac  putative branch site (score: 3)
                                          ttcttattttc  putative PPT
                                          ttcttatttt  TA-rich tract