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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatactgttaagagctgtcatggtgaaattttgttttaaaagtaatctctaaccatcaatattttgtttcagACTTTTCTGGTAGATTTCATAGACTGCTTGCTTTCGTGTCGTTTTGGGAACTTTTTGTGCAATAG

Basic information

species Arabidopsis thaliana
transcript AT5G04540.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04540.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GRMZM2G449163_T01 (Zea mays), 3'ss of exon 8
gtatgtatatact--gttaagagctgtcatggtgaaattttgttttaaaagtaatctc-taaccatcaat---attttgtttcagACTTTTCTGGTAGATTTCATAGACTGCTTGCTTTCGTGTCGTTTTGGGAACTTTTTGTGCAATAG
||| |  |    |   |  | |  |   | ||| |  |     |   |  | |  ||| ||| | | ||    ||||| || ||||  || || || ||||| || || ||  |||| |||||||| ||||||||||| |||||||||||
gtaagccttcttttcctccacaattagaagggtcagctagaagtcccatggaatactcataatctttaaagtgatttttttgcagAAATTCCTAGTTGATTTTATGGATTGTGTGCTATCGTGTCGCTTTGGGAACTTCTTGTGCAATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatggtgaaattttgttttaaaagtaatctctaaccatcaatattttgtttcagACTTTTCTGGTAGATTTCATAGACTGCTTGCTTTCGTGTCGTTTTGGGAACTTTTTGTGCAATAG
                             ctctaac  putative branch site (score: 2)
                                            ttttgtttc  putative PPT
        aaattttgttttaaaa  TA-rich tract