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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacgctatgttggattgatttctaatatttgtttcatggttcttggtttgaattatcataatgcaaaaaaaaaacaaattgaagGTTCACCTGGAGGATGAAGTTACTGACTGGTCAGAGGGGAGTTGCCATACTTTACACATATATGTTACTTGGTCTTGGTTTTCTGAGACGTGTTGCTCCC

Basic information

species Arabidopsis thaliana
transcript AT4G39850.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39850.2 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA18G02110.1 (Glycine max), 3'ss of exon 17
---------------------------------gtacgtacgctatgttggattgatttctaatatttgtttcatggttcttggtttgaattatc-ataatgcaaaaaaaaaacaaattgaagGTTCACCTGGAGGATGAAGTTACTGACTGGTCAGAGGGGAGTTGCCATACTTTACACATATATGTTACTTGGTCTTGGTTTTCTGAGACGTGTTGCTCCC
                                  |||    | |   ||  | |      |   |  ||||| ||| || ||  ||     |||  ||  ||| ||            | ||||||||| ||||| |||||| || | || ||||||||||| ||||||||||| ||  | || |||||||||||||| || ||| | |||  |||| |||| 
gtgagtacctcataattgagctgttatattttactactagtg-tgcattttactagcacttgg-acatgtttgatgcttgttctttccttctattgattttgctaactgttgtttttgtcaagGTTCACATGGAGAATGAAGCTATTAACAGGTCAGAGGGGGGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGATTTTTAAGAACTGTTACTCCT

upper sequence: AT4G39850.2 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA11G38160.1 (Glycine max), 3'ss of exon 17
-----------------------gtacgtacgctatgttggattgattt--ctaatatttg------tttcatggttcttggtttgaattatc-ataatgcaaaaaaaaaacaaattgaagGTTCACCTGGAGGATGAAGTTACTGACTGGTCAGAGGGGAGTTGCCATACTTTACACATATATGTTACTTGGTCTTGGTTTTCTGAGACGTGTTGCTCCC
                        ||  |     |  |||  |  ||||  |||  | |||      ||| ||| || ||  ||     |||  ||  ||| ||         |  | ||||||||| ||||| |||||  || | || ||||||||||| ||||||||||| ||  | || |||||||||||||| || ||| | |||  |||| |||| 
gtgagtacctcataattgagctgttatattttacaacttgtgtgtattttactagcacttggacatgtttgatgcttgttctttccttctattgattttgctaactgttgtttatgtcaagGTTCACATGGAGAATGAAACTATTAACAGGTCAGAGGGGGGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGATTTTTAAGAACTGTTACTCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcatggttcttggtttgaattatcataatgcaaaaaaaaaacaaattgaagGTTCACCTGGAGGATGAAGTTACTGACTGGTCAGAGGGGAGTTGCCATACTTTACACATATATGTTACTTGGTCTTGGTTTTCTGAGACGTGTTGCTCCC
                 tttgaattatcataat  TA-rich tract