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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttactgaccatattcagaattaaaaaagcagagagacgtgctagatgtaggcgtaatgtgttcctttttaccttcccagtgtgattttagttatgacagtttatttttccagGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTA

Basic information

species Arabidopsis thaliana
transcript AT4G02260.3
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02260.3 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 16
gtatttactgaccatattcagaattaaaaaagca-gagagacgtgctaga-tgtaggcgtaatgtgttcctttttaccttcccagtgtgattttagttatgacagtttatttttc-cagGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTA
                 |  ||| |||   || | |    |  |  ||||  | ||| ||| |   |  |   || ||||   |  |  | |  |   | |||   | || |||   || |||| ||||| ||||||||  | ||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||  | |||||| | || |
---------------gctgtgaaataagttagtacgctttatattttagaacggaggagtatttattatcacatttccttaagaaag-aactcca---aagacttctcatctttgatagATTGGTTGGCTCAATGCAATCCGTGAATGGCAAGAAGAGTTTGTTGGTAACATGAGTTCTAGGGAATTTGTTGATACTATCACCCGAGATCTTCTGGGAA

upper sequence: AT4G02260.3 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
-----gtatttactgaccatattcagaattaaaaaagcagagagacgtgctagatgtaggcgtaatgtgttcctttttaccttcccagtgtgattttagttatgacagtttatttttccagGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTA
       || |  || ||   | | ||||||  | ||   | || | | || ||   |||  |      |||   |  | | | | |   | ||| |             | ||  ||||| || | ||||| |||||||| || || ||||||||||||||||| || ||||||| ||| || |||||||| || ||  | || |  ||||| ||||| |
gtacttcatctgttgtcct--tcctgaattatgatagtcaacagtcttccttga---agggat------ttcgaataaatcattcaaagttcattct-------------ttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttcctttttaccttcccagtgtgattttagttatgacagtttatttttccagGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTA
                                          tttatttttcc  CT-rich tract
                          attttagttat  TA-rich tract