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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctattgtcttttcctcaatctcttgatcctcttgaccagatatatttgaattcaagaatggaaacgacttatcaaacacctgagcatcagttgtcattttgttagttaagtctttgtcatttgaatggtgatcattgtgcagGTGCATCTGGACCACAAACACATGGGTCTTGGGGGAGATGATAGCTGGACTCCATGTGTTCACGATAAGTTTCTGATTCCGCCTGCACAGTATTCGTTTT

Basic information

species Arabidopsis thaliana
transcript AT3G54440.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54440.2 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 16
gtaatctattgtcttttcctcaatctcttgatcctcttgaccagatatatttgaattcaagaatggaaacgacttatcaaacacctgagcatcagttgtcattttgttagttaagtctttgtcatttgaatggtgatcattgtgcagGTGCATCTGGACCACAAACACATGGGTCTTGGGGGAGATGATAGCTGGACTCCATGTGTTCACGATAAGTTTCTGATTCCGCCTGCACAGTATTCGTTTT
                                       |    |  |   || |        ||     || || |    |    |   |||| |||| ||||    ||| |  |  || | |||   |||| | |  |    |||||||||||||||||||| ||||||||| | || || |||||||||||| |||| ||||| || || || |  ||||||||  | |  |  || || || |
--------------------------------------catgctacctgcctgcagctttccctgttcttgatttgtt---ccttggcatatca-ttgttatttc--cagtcaccttgttat-attgttatggcggtgttcc--cagGTGCATCTGGACCACAAGCACATGGGTTTGGGTGGTGATGATAGCTGGTCTCCCTGTGTCCATGAGAAATACCTGATTCCAGCGGTGCCATACTCATTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgtcattttgttagttaagtctttgtcatttgaatggtgatcattgtgcagGTGCATCTGGACCACAAACACATGGGTCTTGGGGGAGATGATAGCTGGACTCCATGTGTTCACGATAAGTTTCTGATTCCGCCTGCACAGTATTCGTTTT
        attttgttagttaa  TA-rich tract