Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttttaaggttttagctttcttcttccatatctcaagtgtgtttgtttatttggttatttgctctaacatttttttgttatgttgtttcagGGAGAAAAAAAATGCAAATCCCAACACGAATCTGAATATTTTGTTACTTGGAATTAAAAATGATTGACTGATATGCTTTTGGATGTATACTCATTAATGT

Basic information

species Arabidopsis thaliana
transcript AT3G25585.4
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414049|gb|EG456641.1|EG456641
EST:     AAACAAAATGTGATTGAAATTTTTATTTATAAGAAAAAGCAAATCTTAAG                         GGAGAAGAAAAATGCAAATCCCAACACGAATCTGAATATTTTGTTACTTGG
genomic: AAACAAAATGTGATTGAAATTTTTATTTATAAGAAAAAGCAAATCTTAAGgtatgctttt ... gttgtttcagGGAGAAAAAAAATGCAAATCCCAACACGAATCTGAATATTTTGTTACTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtgtttgtttatttggttatttgctctaacatttttttgttatgttgtttcagGGAGAAAAAAAATGCAAATCCCAACACGAATCTGAATATTTTGTTACTTGGAATTAAAAATGATTGACTGATATGCTTTTGGATGTATACTCATTAATGT
                         ctctaac  putative branch site (score: 2)
                                              ttgtttc  putative PPT
                            taacatttttttgtta  TA-rich tract