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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgaagtcaaacatatttctgaagatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttcatatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GRMZM2G449163_T01 (Zea mays), 3'ss of exon 8
gtatgtatgaagtcaaacatatttctgaagatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttcatatt-tggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
         ||| |     |   ||   |  |   | | ||| ||      |      || |  || ||||   | || |  |  |  | |||||||  ||||| || ||||||||||||||  |||| || ||||| |||||||||||||| ||||| ||
-------gtaagccttcttttcctccacaattagaagggtcagctag----aagtcccatggaatactcataatctttaaagtgatttttttgcagAAATTCCTAGTTGATTTTATGGATTGTGTGCTATCGTGTCGCTTTGGGAACTTCTTGTGCAATAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA10G34510.1 (Glycine max), 3'ss of exon 10
gtatgtatgaagtcaaacatatttctgaa---gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
    |||||    |    |||||| || |   | ||| |||  |   ||  |    || |||   |      | |  | |  | | |||  || | ||| |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| |||||
----gtatgtttccttgaatatttttgtatttgttttgatgcacggttttctttc-tagtaactttccttctagtaacttctactttttcatgatccagGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA20G33040.1 (Glycine max), 3'ss of exon 10
gtatgtatgaagtcaaacatatttctgaa---gatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttca-tatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
    ||||| |  |    |||||| || |   | ||| |||      ||  |    |  ||    |      | | || |  | | |||  || | ||| |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| |||||
----gtatgtatccttgaatatttttgtatttgttttgatgcatggttttctttc-tcgtatctttccttctagtagcttctactttttcatgatccagGCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: PP1S71_215V6.1 (Physcomitrella patens), 3'ss of exon 16
-gtatgtatgaagtcaaacatatttc---tgaagatttcatgttcaacttcttcca---gtaataatagtgtagtcat--ttgccttcatatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
  | | | |  ||   ||  | ||     |  | | |   | || ||       ||   | | |    || | || ||  || |  || ||||     ||  || | ||||| || ||  |  |||||||| ||||||||||||| || ||||||||| | ||||||||
tttgtctcttgagcacaatgttttcaccgtatacagtatttattgaatggagctcaaatgcattgcctgtctcgtaataattactctcttattc----ttttagGCCTTCCTTGTGGAGCTCTTGGATTGCGTGCTTTCATGTCGGTTCGGGAACTTCCTCTGCAACAG

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: EFJ37924 (Selaginella moellendorffii), 3'ss of exon 25
gtatgtatgaagtcaaacatatttctgaagatttcatgttcaacttcttccagtaataatagtgtagtcatttgccttcatatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
                                         || |  |    ||     || ||  |    |  |   |  |||| ||||   || | || || || || || ||||| | | | || || |||||||| ||||||||||||||||||||
---------------------------------------gtaaatcttgtaggtgcggctattgcgg---atcactgacggattttgtgt---agGCGTTTCTTGTCGAATTCATGGACTCCGTTCTATCTTGTCGTTTCGGGAACTTCTTATGCAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacttcttccagtaataatagtgtagtcatttgccttcatatttggtgttgcagACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAG
           agtaataata  TA-rich tract