Sequence
atgc intronic sequence ATGC exonic sequencegtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02560.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA07G40230.2 (Glycine max), 3'ss of exon 17
gtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
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---------------------------------------------------------------------------------------------------------gttagttggatgattgtaaaag---atttct-------tttttatgtttttatcttgtatacatat----ataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 16
gtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
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---------------------------------------------------------------------------------------------------------gttagtcggatgattgtaaaag--aattcttttttatgtttttatcatat-atataatctatat------ataacctttttcctctccagGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACGTTTGGCGACCATCTAAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTG
upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 17
gtctgtagcataaatccccctttttagtcttgtttatgaaaatccatacttcttcgggcaatagacttaataatcttatttgaactctttctattcgtcattatgtttaattacagaattggaaaagcagatttctgcgtttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
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---------------------------------------------------------------------------------------------------------------------gttagcagaatttatttgaaggtttttcttaggcatttt----tact-atatcttatggaactctttttc-----cagGAGGTCAAGGAGTGTGCTATTTCTTGCATGGGCCTTCTCGTTTCAACATTTGGTGATAACCTCAGAGCAGAATTACCTGCATGCCTTCCTGTACTTGTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124938895|gb|EL015483.1|EL015483EST: CAATCTACAATGCGATAATGTCCCGCTTGACAAATCAAGATCAGGACCAG GAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGA
genomic: CAATCTACAATGCGATAATGTCCCGCTTGACAAATCAAGATCAGGACCAGgtctgtagca ... ccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtatttgtaattttgtgttatttacatttcgtaatatctcttcccttcaacagGAGGTCAAGGAGTGTGCTATCACCTGCATGGGTCTTGTGATTTCAACATTTGGTGATCAACTGAGGGCAGAGTTACCTTCATGCCTTCCTGTGCTTGTTG
tatctcttcccttc CT-rich tract
taattttgtgttattt TA-rich tract