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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcagGAAAAGAAGACTGTGAGACCCACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGG

Basic information

species Arabidopsis thaliana
transcript AT1G79990.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GLYMA07G03890.2 (Glycine max), 3'ss of exon 1
gtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcagGAAAAGAAGACTGTGAGACCCACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGG
                   |  |  | ||  |   | |||   |   | |  ||       ||     ||   |||     |  |     |||       ||| |   |||| || ||  ||||||||||||| | |  |||| || || ||||| || |  || |||||||| ||  ||||| |||||||||||| |||||| || ||||| ||||||||||
---------------caaaaaataacattctc---ttattgttttagatgtcttc--caaatgaactataagttgtctctagggaagttttaattggaaatgaaatt-ttgtatattt--cagGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGG

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 12
gtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcagGAAAAGAAGACTGTGAGACCCACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGG
               |    | | ||  |   | ||| |||      |||  || | |   ||    | ||  |  | |  | |  |    |||  |   | ||    | |  |   || |||||||||| || |||  |||| || || ||||| ||||| |||||||| || || |||||| |||||||||||| ||||||||| || |||||||| ||||
---------------tattgcctgccactgttgtctggttac-----aagtgttaggtaaatgcaaat-atattcctgttcggagaaattcaacagagtttaatgaagtggcat--ctttcagGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAGCATATTTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcagGAAAAGAAGACTGTGAGACCCACCTTCTCAGCAGAGCACATTTTTGGTGGGACGTTATTGACAATGTGCTCAAGTGATTTTATATGCTTCTATGATTGGG
                                     cccttgttt  CT-rich tract
                                        ttgtttaattt  TA-rich tract