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...gcatgtaaacttgacttgagttatagaaggaaaacagtgctagcacgttattcttttcgaaaggaacttatttgacccacacattgctttttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATTGAGGGAAGATTACCTTGCTCAAAACGCGTTTACACC
species | Arabidopsis thaliana |
transcript | AT1G78900.2 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAG CTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAEST: gi|125245220|gb|EL259305.1|EL259305
genomic: AGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGgtatgtatca ... ttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACA
EST: TCTTAATGAAATTGTCCAG CTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAEST: gi|116463788|gb|EG506380.1|EG506380
genomic: TCTTAATGAAATTGTCCAGgtatgtatca ... ttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACA
EST: AGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAG CTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAEST: gi|116424281|gb|EG466873.1|EG466873
genomic: AGGCCAGAGAGGTGTTGCAGAGGGAAGACGATCTTAATGAAATTGTCCAGgtatgtatca ... ttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACA
EST: TCTTAATGAAATTGTCCAG CTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACA
genomic: TCTTAATGAAATTGTCCAGgtatgtatca ... ttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACA
cgttattcttttcgaaaggaacttatttgacccacacattgctttttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATTGAGGGAAGATTACCTTGCTCAAAACGCGTTTACACC
atttgac putative branch site (score: 4)
ttgcttttt putative PPT
aacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtaaacttgacttgagttatagaaggaaaacagtgctagcacgttattcttttcgaaaggaacttatttgacccacacattgctttttgtgtgcagCTTGTAGGAAAAGATGCGCTAGCAGAAGGGGACAAAATCACATTGGAAACAGCTAAGCTATTGAGGGAAGATTACCTTGCTCAAAACGCGTTTACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - -gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacat