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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgaactttatatatgataaccacattcatgaataagaaatatcataacttttgtttctatgtgatgtggcttatagGAGGACGAGCAAAGACACTAATGTTTGTGCAACTCAACCCTGACGCTACTTCATACTCAGAGTCAATGAGTACCTTGAAATTTGCAGAGCGTGTCTCTGG

Basic information

species Arabidopsis thaliana
transcript AT1G73860.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 3'ss of exon 17
gttagtgaactttatatat-gataaccacattcatgaataagaaatatcataacttttgtttctatgtgatgtggcttatagGAGGACGAGCAAAGACACTAATGTTTGTGCAACTCAACCCTGACGCTACTTCATACTCAGAGTCAATGAGTACCTTGAAATTTGCAGAGCGTGTCTCTGG
    || |  | ||  | | ||||      | | || ||| |     | |  | |||   |    | ||   |  ||| |||| |||| ||||||||||||||||||||| ||| | ||||||||   |   ||||| |||||  | || ||||| || |||||||| ||  | || |||||
----gtaacatatagttgttgatagatgtgtacgtggataggc----ttactagtttgcctaacttatgcgctttcttgtagGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTTGCTGAAAGGGTTTCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcatgaataagaaatatcataacttttgtttctatgtgatgtggcttatagGAGGACGAGCAAAGACACTAATGTTTGTGCAACTCAACCCTGACGCTACTTCATACTCAGAGTCAATGAGTACCTTGAAATTTGCAGAGCGTGTCTCTGG
                    tcataac  putative branch site (score: 2)
         aataagaaatatcata  TA-rich tract