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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttttatctgctacttccaagtgatttacttttaacgtttcttggattataaccagtcgtctggccttattcaatggactggtcatgccttgttttgtcttcatgatagctttcataatcttttcacgcccttcttactcattagtattctcctaactaaatcatgtgatcatgtagGTTGCCTCTCAGCCAGCTATGGAATGTGTACCTCTTGTGATGGAACCAGAATCTGCCTTTTACGATGATCCTGTTATTGTGTTGGATTTTCAATCTCTTT

Basic information

species Arabidopsis thaliana
transcript AT1G67500.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67500.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GRMZM2G081639_T01 (Zea mays), 3'ss of exon 16
gttcgttttatctgctacttccaagtgatttacttttaacgtttcttggattataaccagtcgtctggccttattcaatggactggtcatgccttgttttgtcttcatgatagctttcataatcttttcacgcccttcttact--cattagtattctcctaactaaatc--atgtgatcatgtagGTTGCCTCTCAGCCAGCTATGGAATGTGTACCTCTTGTGATGGAACCAGAATCTGCCTTTTACGATGATCCTGTTATTGTGTTGGATTTTCAATCTCTTT
                                                                                       ||  ||   |   | ||  |  ||||  |   |  ||| |  ||    |  ||||    | ||  |   || | |     |    ||  |   || ||||||| ||||||||||| ||||| ||| | || ||||| ||||||||||| || ||||| |||  |||||| ||| |||||||||||||||| || || |
-----------------------------------------------------------------------------------ccaccacaccacataaag-ctcgaaaataggatattttttctgtaaac-tgttaattaccagtactaccagcatcttgatgtgcttcggtgctactttgcagGTTGCTTCTCAGCCAGCCATGGAGTGTTTGCCGCTTGTAATGGAACCAGAGTCGGCCTTCTACCCTGATCCAGTTGTTGTGTTGGATTTTCAGTCCCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacgcccttcttactcattagtattctcctaactaaatcatgtgatcatgtagGTTGCCTCTCAGCCAGCTATGGAATGTGTACCTCTTGTGATGGAACCAGAATCTGCCTTTTACGATGATCCTGTTATTGTGTTGGATTTTCAATCTCTTT
                  attagtatt  TA-rich tract