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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattattttatcccatattcaaccttctttggtttgcttttagtttgagatatatagtcgtctccatcatttggcttgtgaatgagggaatggcaagaaaattcatttgtttattacagtcactgtttatatgttaatatgagcttttgacttaacagaggaaagcaacatgtgatttcaattttgtatagGCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGGCACAGTTATACAATCAACTGTTTCAGCACGACGAGTTGTCGGCGTTGAT

Basic information

species Arabidopsis thaliana
transcript AT1G61210.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402379|gb|EG444971.1|EG444971
EST:     TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAG                         GCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG
genomic: TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAGgtaaattatt ... ttttgtatagGCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG
EST: gi|125247124|gb|EL261209.1|EL261209
EST:     TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAG                         GCCTGTAAATGTCTCCTTGGAAAT
genomic: TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAGgtaaattatt ... ttttgtatagGCCTGTAAATGTCTCCTTGGAAAT
EST: gi|116416015|gb|EG458607.1|EG458607
EST:     TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAG                         GCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG
genomic: TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAGgtaaattatt ... ttttgtatagGCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG
EST: gi|19878718|gb|AU239549.1|AU239549
EST:     TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAG                         GCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG
genomic: TCTCAATTAGCACCCGTCCTCACAGGCTTATTGGGCAGCAAGACTGAGAGgtaaattatt ... ttttgtatagGCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgagcttttgacttaacagaggaaagcaacatgtgatttcaattttgtatagGCCTGTAAATGTCTCCTTGGAAATGCTCTTGAAGCTTGTAGCAGTGTTTGGCACAGTTATACAATCAACTGTTTCAGCACGACGAGTTGTCGGCGTTGAT
             acttaac  putative branch site (score: 3)
                                      atttcaattttgtata  TA-rich tract