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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaacacaatgttaaacacataaatgtgtattcgataggagtacttgactcgtgtattcgctgatctgttttgggatttgaacatcggttagGCCTTGCCCGTCTTCACATTTGCAAACCAGGCGGGACTTGACATGCTGGAGACTACATTAGTTGCTCTTCAAGACATCTCTTTAGAGAAGATATTTGATG

Basic information

species Arabidopsis thaliana
transcript AT1G52150.2
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52150.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 16
----gtaacaaacacaatgttaaacacataaatgtgtattcgataggagtac-ttgactcgtgtattcgctgatctgttttgggatttgaacatcggttagGCCTTGCCCGTCTTCACATTTGCAAACCAGGCGGGACTTGACATGCTGGAGACTACATTAGTTGCTCTTCAAGACATCTCTTTAGAGAAGATATTTGATG
     |  | |     ||| | | ||  | ||  |   ||  || |   ||| |||| |  |  |   ||     |   ||    |    |  ||    |||| || || || ||||| || ||||||||||| || ||||| ||||| ||||| || || ||||| || ||||||||  |||| ||||||||||| ||||
tagtttttccattgatatgcttatcatgttaagatac-ttttatggttttaccttgatttttcaaaaagccagcataacttttagtgcttaattcctgcagGCATTACCTGTATTCACCTTCGCAAACCAGGCTGGTCTTGATATGCTTGAGACAACCTTGGTTGCCCTGCAAGACATTACTTTGGAGAAGATATTCGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtacttgactcgtgtattcgctgatctgttttgggatttgaacatcggttagGCCTTGCCCGTCTTCACATTTGCAAACCAGGCGGGACTTGACATGCTGGAGACTACATTAGTTGCTCTTCAAGACATCTCTTTAGAGAAGATATTTGATG
                     cgctgat  putative branch site (score: 4)
                                      atttgaa  TA-rich tract