Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactcgataactttaatccacttcttttataactcgcatacagtagttctcgtgatttatttcttctttctctgctggtttatctgatattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGAATTTAGTTCTTGAAACATTCAGA

Basic information

species Arabidopsis thaliana
transcript AT1G51710.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485386|gb|EG527978.1|EG527978
EST:     CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG                         GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
genomic: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
EST: gi|125314430|gb|EL328515.1|EL328515
EST:     CAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG                         GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
genomic: CAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
EST: gi|86084161|gb|DR379920.1|DR379920
EST:     CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG                         GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
genomic: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagttctcgtgatttatttcttctttctctgctggtttatctgatattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCATGTAATCTCTCTCTTTCTTTTGATGAATTTAGTTCTTGAAACATTCAGA
                                        atctgat  putative branch site (score: 4)
             atttatttcttcttt  TA-rich tract