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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaagaaaatattttcactgaataccctctttcctttctgaaacatgaaagattaatattcgttttgatagGACGGAGACAGAGTATGTCAGCCAGATGCTTACAAAAATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTCGCTCATCCAAAACAGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G30680.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30680.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: Vv18s0001g01350.t01 (Vitis vinifera), 3'ss of exon 4
------------------------gtgagtgaagaaaatattttcactgaataccctctttcctttctgaaacatgaaagattaatattcgttttgatagGACGGAGACAGAGTATGTCAGCCAGATGCTTACAAAAATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTCGCTCATCCAAAACAGTTG
                           | |     |  |  | | |  |   |  || |    ||   ||       || |||||  |    | | | ||||| || ||||||||||| || |||||||| |||| ||||||||| ||| | || || ||||| || ||||| |||||||| || ||||| | ||||   
atttaaatccatttcttcatactccctactttgagagctcctcttatggtgcattctataaatttagagagcatcccaacattaacctaatgtgttacagGACAGAAACAGAGTATGTGAGTCAGATGCTAACAATAATCAAACGATTTGCTCAGCATCACTCTTGTCATGTTTGGTTTGTAGCGCATCCTAGACAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgaataccctctttcctttctgaaacatgaaagattaatattcgttttgatagGACGGAGACAGAGTATGTCAGCCAGATGCTTACAAAAATCAAACGCTTTTCCCAACACCACTCCTGCCATGTCTGGTTTGTCGCTCATCCAAAACAGTTG
                                  gattaat  putative branch site (score: 3)
                                          ttcgtttt  CT-rich tract
                            atgaaagattaatatt  TA-rich tract