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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaactccaaatcttctgctctgttttttcaatcgtgatcgaaattttctaacttatctctgtgtgatttaacatcacagGTGGTCGAGCAAAGACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGG

Basic information

species Arabidopsis thaliana
transcript AT1G18410.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 17
---gttaac--tccaaatcttctgctctgttttttcaatcgtgatcgaaattttctaacttatctctgtgtgatttaacatc--acagGTGGTCGAGCAAAGACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGG
    | ||   |  |  |         ||  | |  | |     |     ||||   |  |||     | | |  |||  ||   ||||||| | ||||||||||||||||||||||||| | ||||||||| ||   |||||||||||| | || || ||| | || || || ||  | || |||||
gtaatcaattatttagttgaaaaatcatgcatgtggagttagatttatggtttttgtaactataatcttataaaataatctcttgcagGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAATCCTGATGTTGAGTCATATTCAGAGACTATAAGCACTCTAAAGTTTGCTGAAAGGGTTTCTGG

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 3'ss of exon 17
gttaactccaaatcttctgctctgttttttcaatcgtgatcgaaattttctaacttatct---ctgtgtgatttaacatcacagGTGGTCGAGCAAAGACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGG
         | || |  |  |   |   |     ||||    |   || |||  ||  ||    | || | |||    |   |||||| | ||||||||||||||||||||||||| | || |||||||||   |||||||||||  | || |||||||| ||||| || ||  | || |||||
------gtaacatatagttgttgatagatgtgtacgtggat-aggcttactagtttgcctaacttatgcgctttc---ttgtagGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTTGCTGAAAGGGTTTCTGG

upper sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 16
lower sequence: GRMZM2G124883_T01 (Zea mays), 3'ss of exon 8
----------------------------gttaactccaaatcttctgctctgttttttcaatcgtgatcgaaattttctaacttatctctgtgtgatttaacatcacagGTGGTCGAGCAAAGACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGG
                               ||      | |   |  |  |||| |  |   | |  |  | | ||     | ||    || || ||| |     ||||||| | |||||||||||| |||||||||||| | ||||| |||| |   |||||||||||  |||| || |||||||| || || ||  | || |||||
gtaacaataacatatagttgttcctcggaaaaaaggggcaccaaatagttggtttatata--tgcggacatattatttatgataattctcgtctgttttcatg---cagGTGGGCAAGCAAAGACACTGATGTTTGTTCAAATTAATCCGGATACTGGATCATATTCAGAAACAATAAGCACTTTGAAGTTTGCTGAAAGGGTTTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcaatcgtgatcgaaattttctaacttatctctgtgtgatttaacatcacagGTGGTCGAGCAAAGACACTAATGTTTGTTCAACTGAATCCTGATATTACTTCATATTCAGAGTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGG
                aaattttctaacttat  TA-rich tract