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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattctaaactcaggtcgcttttgctttgcgagtacgtggtacaaaatgaagtcttaaggtggtggaatctcccttactttgtgatgtagGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTATCGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAG

Basic information

species Arabidopsis thaliana
transcript AT5G51710.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 16
---gtattgattctaaactcaggtcgcttttgctttgcgag-tacgtggtacaaaatgaagtcttaaggtggtggaatctcccttactttgt----gatgtagGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTATCGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAG
   || || |   |||  |      |||||||  ||  ||  || ||   |        |   |||| |        ||||    | | | |    | |||||||||||||||||||||| || ||||| ||||||||||| || ||||| || ||||| ||| |||| ||||| || |||||||| ||||||||| | || |
aatgtgtttaggataattt---actgcttttgaattatgaactatgtttcagttgtcacaagattaaagaaaaaagttctcttaaagtgtatatttgttgtagGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTTATTCATGTGCACTTCCTTTGGAACCATGTGGATATCTTGCTGG

upper sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 9
---------gtattgattctaaactcaggtcgcttttgctttgcgagtacgtggt-acaaaatgaagtcttaaggtggtggaatctcccttactttgtgatgtagGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTATCGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAG
          || || || | || |  |  |   | ||   |  |  |  || || |||| || ||     || ||  |   |          |||||  |||||||||||||||||||||| || ||||| ||||||||||| || ||||| || ||||||||  |||| ||||| || |||||||| ||||||||  |  | |
taggataatttactgcttttgaattatgaac---tatgaactatgtttcagttgtcacaagattaaagaaaaacgttctcttaaaagtgcatatttgt--tgtagGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTCATACATGTGCACTTCCTTTGGAACCATGTGGATATTTTGTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtggtacaaaatgaagtcttaaggtggtggaatctcccttactttgtgatgtagGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTATCGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAG
                                    cccttac  putative branch site (score: 3)
                                 tctcccttactttgt  CT-rich tract
     tacaaaat  TA-rich tract