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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccagaattctcaatctcttttcacagaaacaagtatttacgatgctcatatatcacttttgtctcttctctgtttctcagGTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGG

Basic information

species Arabidopsis thaliana
transcript AT5G48520.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48520.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA17G15510.1 (Glycine max), 3'ss of exon 15
----gtgagtc-------cagaattctcaatctc---ttttcacagaaacaagtatttacgatgctcatatatcacttttgtctcttctctgtttctcagGTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGG
     |||||        || |||||||||  |    || ||            |||||  | |    |        ||  | ||   |    |    ||| | |  | |||| | ||||||||| ||||||||||||| |||||||| || ||||| || ||| |||| ||| ||
agcaatgagtttctttcacataattctcaagtttggattgtctttttgttgccgatttaaaaagaaactgagaagtgttcatgtcaatttgaatctgtagGCGCAATCTTATTAAAAATCTGCAGAAACTGCTCTTTGCATCTTCAACAACAGCACAGCCAATACTGACCCCTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacaagtatttacgatgctcatatatcacttttgtctcttctctgtttctcagGTGTACCCATATTCAGAATCTGCAGCAACTGCTCTTTGCGTCTTCAACTACGGCACAACCCATATTGACACCTTGG
                         tatcacttttgtctct  CT-rich tract
     aagtattta  TA-rich tract