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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaccgtaacttcttctctccccgtattttctattagcaagctttctgaaacatctctatttgttcttgttcgccagGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTCGTACCCACAAAAGACAACAAGCGACTCTTCTCTAACTTCATAGCTGGGATTG

Basic information

species Arabidopsis thaliana
transcript AT5G46340.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086940|gb|DR382699.1|DR382699
EST:     CGGGATACCCTATGCTCAATTTCATGCTGACAACTGCTATATACGTCCTT                         GTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTYGTA
genomic: CGGGATACCCTATGCTCAATTTCATGCTGACAACTGCTATATACGTCCTTgtaagaaacc ... tgttcgccagGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTCGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtattttctattagcaagctttctgaaacatctctatttgttcttgttcgccagGTATCTCACCGTCTCTTTGAACTAACCAACACACTCAAGACGGTTTTCGTACCCACAAAAGACAACAAGCGACTCTTCTCTAACTTCATAGCTGGGATTG
                               tctctatttgttctt  CT-rich tract
     tttctatta  TA-rich tract