1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaggaacttgattgaatttctgtttattagcctttgtcgtgtgcttgatgtggaagaaaaagcaataatgaatatgtgttttgtttgcttgcagCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCAAATTCCTTTATTGCACCAGTAACAGATGATATCAAAGATGACCATCAGC
species | Arabidopsis thaliana |
transcript | AT5G22480.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAGAGAGTAAGTTGAACAAATGGAGAGAATTTGGAGCCAGGCTCACTAAG CTCCTAAGCTTTGAACAGCCCTGGACATTGATTCTTGATGATGAATTAGCAEST: gi|86076791|gb|DR372548.1|DR372548
genomic: AAGAGAGTAAGTTGAACAAATGGAGAGAATTTGGAGCCAGGCTCACTAAGgtaggaactt ... ttgcttgcagCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCA
EST: AAGAGAGTAAGTTGAACAAATGGAGAGAATTTGGAGCCAGGCTCACTAAG CTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCA
genomic: AAGAGAGTAAGTTGAACAAATGGAGAGAATTTGGAGCCAGGCTCACTAAGgtaggaactt ... ttgcttgcagCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCA
tgtgcttgatgtggaagaaaaagcaataatgaatatgtgttttgtttgcttgcagCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCAAATTCCTTTATTGCACCAGTAACAGATGATATCAAAGATGACCATCAGC
gcttgat putative branch site (score: 5)
ttttgttt putative PPT
aataatgaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaacttgattgaatttctgtttattagcctttgtcgtgtgcttgatgtggaagaaaaagcaataatgaatatgtgttttgtttgcttgcagCTCCTAAGCTTTGAACAGCCGTGGACATTGATTCTTGATGATGAATTAGCAAATTCCTTTATTGCACCAGTAACAGATGATATCAAAGATGACCATCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG