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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaattacaagcccgttctcgctttctctcatgggcttttccttcatctgatccctccttcatgttcccttttgtatcgacttttgttcttctatgtatcttttggatctattagagataattttgtcagctcatcttggcctttctccattctcaaagctatgaaatttggaacatttggcagGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTGGCATAGAAGTGGACACTGCGAGAGAACGTCTTAGATTTTGGATCAGCAGGAGCGCACATT

Basic information

species Arabidopsis thaliana
transcript AT5G13260.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19740667|gb|AU226020.1|AU226020
EST:     AGAGTCTGAGGATGTTCTCTTCAAGGAG                         GCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTGGCATAGAAGTG
genomic: AGAGTCTGAGGATGTTCTCTTCAAGGAGgtacagaatt ... catttggcagGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTGGCATAGAAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcatcttggcctttctccattctcaaagctatgaaatttggaacatttggcagGCTTGGCTCACGTACTTCTGGAGAAGAGCACAATCCCTTGGCATAGAAGTGGACACTGCGAGAGAACGTCTTAGATTTTGGATCAGCAGGAGCGCACATT
                               tatgaaattt  TA-rich tract