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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactgaacttagcaatttatgagaaacttttccaaaataagttagttgctgtgaattttgagaaaagatgtcggaataggatattgacaaagaaataatctaaaatattgattttggctgaattatctaacagtaagtaaactttaatatctgggattgcatatctgatatttataattatttttttgtgcagCCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAG

Basic information

species Arabidopsis thaliana
transcript AT5G12370.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA16G01660.1 (Glycine max), 3'ss of exon 14
gttactgaacttagcaatttatgagaaacttttccaaaataagttagttgctgtgaattttgagaaaagatgtcggaataggatattgacaaagaaataatctaaaatattgattttggctgaattatctaacagtaagtaaactttaatatctgggattgcatatctgatatttataattatt-tttttgtgcagCCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAG
                                                                                                  | |    ||| || |  | |     ||  |       | | |  |  ||||||| |   ||    | |   ||| ||  || | || || || | ||||| || ||||||||| || ||||||||||  | |||||||||||||||||||| 
-----------------------------------------------------------------------------------------------ggcacttactaatgtttaggtagttaagatgctgatcttttgatttgaacttaatat-taaaatcctttgtagaataattgaaactgttgttcttttacagCCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA07G05160.1 (Glycine max), 3'ss of exon 14
gttactgaacttagcaatttatgagaaacttttccaaaataagttagttgctgtgaattttgagaaaagatgtcggaataggatattgacaaagaaataatctaaaatattgattttggctgaattatctaacagtaagtaaactttaatatctgggattgcatatctgatatttataattatt-tttttgtgcagCCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAG
                                                                                                  | |    ||| || |  | |     ||  |   |   |  ||  |  ||||||| |   ||    | |   ||  ||  || | || || || | ||||| || ||||||||| || ||||||||||  | |||||||||||||||||||| 
-----------------------------------------------------------------------------------------------ggcacttaccaatgtttaggtagctaagatgctgatattttgtgttgaacttaatatttta-atcctttgtagaattattgaaactgttgttcttttacagCCTGCTACACTTGCAACCCATGTTAAAGCAGTGTTTACTTGCCTGCTAGACCAA

upper sequence: AT5G12370.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 3'ss of exon 14
gttactgaacttagcaatttatgagaaacttttccaaaataagttagttgctgtgaattttgagaaaagatgtcggaataggatattgacaaagaaataatctaaaatattgattttggctgaattatctaacagtaagtaaactttaatatctgggattgcatatctgatattt-ataattatttt---tttgtgcagCCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAG
                                                                                             |  || |  |||     | |||||    | ||| | | |   || |||   |   |||| |  | ||| || | |  || || || |||| | |   |||||  ||||  | || |||||| ||||||| |||||| | |||||||||||||||||||| 
---------------------------------------------------------------------------------------------gggattacttaa-----tcattttccaaggattttgtgagcatatgtagtttcggatattttag-ttgtatttttactaattgatgattaatgtgcctttgtatagCCTACTACCCTTGCAACCAATGTAAAAGCTGTGTTTACTTGCCTGCTAGACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactttaatatctgggattgcatatctgatatttataattatttttttgtgcagCCAGCCACACTTGCAGCCAATGTTAAAGCTATATTTACTTGCCTGCTAGACCAG
                        atctgat  putative branch site (score: 4)
                                       ttattttttt  putative PPT
                 attgcatatctgatat  TA-rich tract