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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaagacccatgtctctggctaagtctcctttctcgtgtcagagatttcggtgaaataaccttgttgtcctttttctttgcacagCACAGAGAGACTTCCATGTCATTCAAGACAATGGATGATGGCCAAGTATCACTATACGCG

Basic information

species Arabidopsis thaliana
transcript AT5G04895.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04895.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA15G29910.1 (Glycine max), 3'ss of exon 17
------------gtaagtctaagacccatgtctc---tggctaagtctcctttctcgtgt-----cagagatttcggtgaaataacc--ttgttgtcctttttctttgcacagCACAGAGAGACTTCCATGTCATTCAAGACAATGGATGATGGCCAAGTATCACTATACGCG
             |   | |||      | | ||   | | |||||    |   | || |       ||| |||   ||   ||     ||  |    | || || || ||||||||| ||||| |||||||||||||| ||||||||||||||||| || | | | || || 
gtgagctatttgtttcttataatttttgtttttctcctcggtaagttctatgattagtttacaagttgagcttttactgttttatttgattaattaattcttcctctgtacagCACAGGGAGACATCCATGTCATTCAAAACAATGGATGATGGCCAGGTTTTATTGTATGCT

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA08G24630.1 (Glycine max), 3'ss of exon 19
-----------gtaagtc-taagacccatgtctc---tggctaagtctcctttctcgtgt-----cagagatttcggtgaaataacc--ttgttgtcctttttctttgcacagCACAGAGAGACTTCCATGTCATTCAAGACAATGGATGATGGCCAAGTATCACTATACGCG
           ||  ||  |||      | | ||   |   ||||| |  | | | |  |       ||| |||   ||   ||     ||  |    | || || || ||||||||| ||||| ||||||||||| || ||||||||||||||||| || | | | || || 
gtgagctatgtgtttgttataaattttgtttttctcctcaataagtattatctttagcttacaagttgagcttttactgttttatttaattaattaattcttcctctgtacagCACAGGGAGACATCCATGTCATTTAAAACAATGGATGATGGCCAGGTTTTATTGTATGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcgtgtcagagatttcggtgaaataaccttgttgtcctttttctttgcacagCACAGAGAGACTTCCATGTCATTCAAGACAATGGATGATGGCCAAGTATCACTATACGCG
                       aaataac  putative branch site (score: 2)
                             ccttgttgtccttttt  CT-rich tract
                                        tttttcttt  TA-rich tract