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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttggtagcttcatttagatatatagattcttctgggtctcattagatgtacagagtttatatgtttcatgattatgcagGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCACTATTTTTTGACACGACAGAATTGCCGAAAAACGTTGCTGAG

Basic information

species Arabidopsis thaliana
transcript AT4G34830.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125303319|gb|EL317404.1|EL317404
EST:     GATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAG                         GAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTC
genomic: GATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAGgtttgttggt ... gattatgcagGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTC
EST: gi|86087867|gb|DR383626.1|DR383626
EST:     GATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAG                         GAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCA
genomic: GATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAGgtttgttggt ... gattatgcagGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCA
EST: gi|116478999|gb|EG521591.1|EG521591
EST:     TAGTCGATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAG                         GAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCA
genomic: TAGTCGATGGATTTGGAGAGTATGATCCTCGTGCATTTTCACTGCTTGAGgtttgttggt ... gattatgcagGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcttctgggtctcattagatgtacagagtttatatgtttcatgattatgcagGAGGCTACTTCTCTTGGAGTTCTTCCTTCTGTGTCATTCAATAAAATTCCACTATTTTTTGACACGACAGAATTGCCGAAAAACGTTGCTGAG
                               tttatatgtttcat  TA-rich tract