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gtatatttattacttgaagctaaatcagttaaagtaaagaatctgattccttttgtgtttgctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGTGGGAAACATCTCGTAAAGAACTCATCGACTCCTCTTTTCTTCCTTCTTA
species | Arabidopsis thaliana |
transcript | AT4G25070.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG TGGAAAGAGGAATGAGGGAGCEST: gi|116426415|gb|EG469007.1|EG469007
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGC
EST: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG TGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGTEST: gi|116426421|gb|EG469013.1|EG469013
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
EST: TTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATG TGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
genomic: CTGGATCAACCGACTCGGGCAACATTCATCTTCACATGATGCAATTGATGgtatatttat ... gctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGT
gaagctaaatcagttaaagtaaagaatctgattccttttgtgtttgctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGTGGGAAACATCTCGTAAAGAACTCATCGACTCCTCTTTTCTTCCTTCTTA
ttaaagtaaagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttattacttgaagctaaatcagttaaagtaaagaatctgattccttttgtgtttgctgggacagTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTGTGGGAAACATCTCGTAAAGAACTCATCGACTCCTCTTTTCTTCCTTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC