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gtatataacttacatctcatacattcatatctataaatagaaagactaatgatccgatccaattccaatctacagATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAGAATCCACGAGGAGTCATGGTGGAGGTGTATTGGCAACAAGACGAGTCAG
species | Arabidopsis thaliana |
transcript | AT3G47730.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAG ATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAGEST: gi|116447294|gb|EG489886.1|EG489886
genomic: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAGgtatataact ... caatctacagATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAG
EST: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAG ATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAGEST: gi|124772737|gb|EH862866.1|EH862866
genomic: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAGgtatataact ... caatctacagATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAG
EST: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAG ATACCGGTAGGG
genomic: TTGATGGAACAATGGTCACTCTCGACTTAACATCTGGTTCTTCAGTCGAGgtatataact ... caatctacagATACCGGTAGGG
acattcatatctataaatagaaagactaatgatccgatccaattccaatctacagATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAGAATCCACGAGGAGTCATGGTGGAGGTGTATTGGCAACAAGACGAGTCAG
gactaat putative branch site (score: 2)
atatctataaatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatataacttacatctcatacattcatatctataaatagaaagactaatgatccgatccaattccaatctacagATACCGGTAGGGGCAAGATTTATCGGGATACCGGGAACAGAAACTGCAGAGAATCCACGAGGAGTCATGGTGGAGGTGTATTGGCAACAAGACGAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG