1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttagaattaagattaagatactctttcttcttaccattttattgttttaagtttacaaaatttgacaagattaatctgttttttttcatcagGATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTATTTATAAGAAAAAGCAAATCTTAAG
species | Arabidopsis thaliana |
transcript | AT3G25585.4 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACTTCAGTCATTCATGAGATCACAACTGCACTTGGAATCTACTGCTTCAG GATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTATTEST: gi|124819310|gb|EH904176.1|EH904176
genomic: ACTTCAGTCATTCATGAGATCACAACTGCACTTGGAATCTACTGCTTCAGgttagaatta ... ttttcatcagGATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTATT
EST: CAACTGCACTTGGAATCTACTGCTTCAG GATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTA
genomic: CAACTGCACTTGGAATCTACTGCTTCAGgttagaatta ... ttttcatcagGATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTA
tttattgttttaagtttacaaaatttgacaagattaatctgttttttttcatcagGATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTATTTATAAGAAAAAGCAAATCTTAAG
gattaat putative branch site (score: 3)
tctgttttttttcatc CT-rich tract
tgttttaagtttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaattaagattaagatactctttcttcttaccattttattgttttaagtttacaaaatttgacaagattaatctgttttttttcatcagGATTACTCGGAAAGAAGCTTGAAGAAACAAAATGTGATTGAAATTTTTATTTATAAGAAAAAGCAAATCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA