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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttttgcagttttttggagtagcctcttggtttgtaaggagcagcttttgaataatctcctgttttcatttgcagCTACAATCTTCGCTCCATATCTGCTTCTGCAACAGCAGTGATCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G18520.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077656|gb|DR373413.1|DR373413
EST:     ATGTTGGGTGATCTGTGTGGT-GGRAAATGCTAGTTATTCTCGAGGGCGG                         CTACAATCTTCGCTCCATATCTGCTTCTGCAACAGCAGTGATCAAG
genomic: ATGTTGGGTGATCTGTGTGGTGGGAAAATGCTAGTTATTCTCGAGGGCGGgtatgtgttt ... tcatttgcagCTACAATCTTCGCTCCATATCTGCTTCTGCAACAGCAGTGATCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctcttggtttgtaaggagcagcttttgaataatctcctgttttcatttgcagCTACAATCTTCGCTCCATATCTGCTTCTGCAACAGCAGTGATCAAG
                                   tctcctgttttcattt  CT-rich tract
                         ttttgaataat  TA-rich tract