Sequence
atgc intronic sequence ATGC exonic sequencegtaacaactcaatcatccagggtttagatttgtgcattgctgcctttttttttgtgatcacggaatcatataggatgccctgttatacatgtgcttgaatgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
Basic information
species | Arabidopsis thaliana |
transcript | AT3G16785.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 15
gtaacaactcaatcatccagggtttagatttgtgcattgctgcctttttttttgtgatcacggaatcatataggatgccctgttatacatgtgcttgaatgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
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--------------------------------------------------------------------------gtattcttttgcatctgtctacagtcatatacagagttagtttcagtcagcttaatgatatgcactttt-----tgcagGTGTATGTTCACAGTAAAATCATGATTGTTGATGATTGTATTACTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTG
upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 15
gtaacaactcaatcatccagggtttagatttgtgcattgctgcctttttttttgtgatcacggaatcatataggatgccctgttatacatgtgcttgaatgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
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--------------------------------------------------------------------------gtattctttcgcatctgtctatggtcatatacagaggtagtttcagtcagcttaatgatatgcactttt-----tgcagGTGTATGTTCACAGTAAAATCATGATTGTTGATGATTGTATTACTTTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTG
upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 16
----------------------------------------------------gtaacaactcaatcatccagggtttagatttgtgcattgctgcctttttttttgtgatcacggaatcatataggatgccctgtta-tacatgtgcttg-aatgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
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gtattgtgttttgctgatgcacataatcacatatgtacatttattttcaatgttccctaatcaatta--caaaatctatttgtatgcatctttttcatgttttttttt-ttaaatttttataatggacatgggaaaaacaattgagcttggaactcagtggtatatcatttttcacattatattcctattgtttc-------tgtagGTGTATGTGCATAGCAAAATCATGATAGTTGATGACTGCACAACCTTGATTGGATCCGCTAACATTAATGATAGGAGTTTGCTTGGATCAAGAGATTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164109020|gb|ES160809.1|ES160809EST: TTAGGGCATATGGTAAACTTTCTGAGGATGGACCTGTCGCCACTAGTCAG GTGTATGTTCACAGTAAAA
genomic: TTAGGGCATATGGTAAACTTTCTGAGGATGGACCTGTCGCCACTAGTCAGgtaacaactc ... ctcaatgcagGTGTATGTTCACAGTAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
tgctatttttttctct CT-rich tract
tattaaaaatgtgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacaactcaatcatccagggtttagatttgtgcattgctgcctttttttttgtgatcacggaatcatataggatgccctgttatacatgtgcttgaatgcagtggtagtgagtattaaaaatgtgaatgctatttttttctctcaatgcagGTGTATGTTCACAGTAAAATCATGATAGTTGATGACCGTGCTGCATTGATTGGATCTGCCAATATTAACGACCGGAGTTTGCTTGGCTCAAGAGATTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA