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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaatttctggcaccttcttaacatcttatacagaaattaattaggcctggtgtattataaatgactccatttctactttgtagTCTAGCGGCAGGTATGCAGCTTTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTCGAACCCCGAAAT

Basic information

species Arabidopsis thaliana
transcript AT3G15220.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 14
---gtatgaaatttctggcaccttcttaacatcttatacagaaatta-attaggcctggtgtattataaa-tgactccatttctactttgtagTCTAGCGGCAGGTATGCAGCTTTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTCGAACCCCGAAAT
    | |  ||  | ||  || ||  ||| |    |   ||   ||| |   |  |||     | | ||| |||     ||  |    ||||||||||| |||| |||||  ||||||| ||||||||  ||||||||||||||||| | ||||| ||| | ||||| ||||  || || |  || || |  |
gtatttttcaagctgtgttactttgataagaaaccaataagttcttacagctgttctgtacagtcacaaactgagaattttgattaactgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTTTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT

upper sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: GLYMA13G34970.1 (Glycine max), 3'ss of exon 15
---gtatgaaatttctggcaccttcttaacatcttatacagaaatta-attaggcctggtgtattataaa-tgactccatttctactttgtagTCTAGCGGCAGGTATGCAGCTTTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTCGAACCCCGAAAT
    | |  ||  | ||  || ||  ||| |   |    ||   ||| |   |  |||     | | ||| |||     ||  |    ||||||||||| |||| |||||  ||||||| ||||||||  ||||||||||||||||  | ||||| ||| | ||||| ||||  || || |  || || |  |
gtattgttcaagctgtgttactttgataagaaacttattagttcttacagctgttctgtaaagtcacaaactgagaattttgattaactgtagTCTAGCAGCAGCTATGCTTCTTTTGAAGATGCTTCTTCAAGTGGAACTGTTGTCTTACGTGGCCAGCATGATGAGTCTGATTCTCCACAGACACCAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagaaattaattaggcctggtgtattataaatgactccatttctactttgtagTCTAGCGGCAGGTATGCAGCTTTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTCGAACCCCGAAAT
      aattaat  putative branch site (score: 3)
                                    ctccatttctacttt  putative PPT
                      tgtattataaatga  TA-rich tract