1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaacttgtatatttctttgcatagtcttaactttcatgtcatatccctagctttgctctgcattactgatgataaaatttactaatatatttgtaaatttgttcatagGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGATCCCCCCAAGCGGGAGAGAAAGCGCAA
species | Arabidopsis thaliana |
transcript | AT3G06400.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGACTTCTATGATTTTGATGATGACAATAAG GATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGATEST: gi|116473628|gb|EG516220.1|EG516220
genomic: GTGCTGACTTCTATGATTTTGATGATGACAATAAGgtaacttgta ... ttgttcatagGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGAT
EST: GTGCTGACTTCTATGATTTTGATGATGACAATAAG GATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGAT
genomic: GTGCTGACTTCTATGATTTTGATGATGACAATAAGgtaacttgta ... ttgttcatagGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGAT
tgctctgcattactgatgataaaatttactaatatatttgtaaatttgttcatagGATGAAAACAAGCTCGATTTTAAAAAGATTGTAAGCGACAATTGGAATGATCCCCCCAAGCGGGAGAGAAAGCGCAA
tactaat putative branch site (score: 1)
tttgttc putative PPT
attactgatgataaaa TA-rich tract