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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcggcagtaccttgttctctaaaaaaaaaaatagtttggacttttagcaatttcatcacatatgtttttacatttttttataaatagataaaacttctttcataaaatgtctgactttgaaagctcttcaaatttacagATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTACACTAGGGAAACTTAGTGCACCCCGGATCTTAAGAGTTCACAAG

Basic information

species Arabidopsis thaliana
transcript AT3G05090.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116449112|gb|EG491704.1|EG491704
EST:     TGCTTGGACGCTGTCTTGAACAATCGGCTTCCACCTAGAGAAAATACAAA                         ATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTAC
genomic: TGCTTGGACGCTGTCTTGAACAATCGGCTTCCACCTAGAGAAAATACAAAgtattcggca ... aaatttacagATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTAC
EST: gi|124704109|gb|EH795511.1|EH795511
EST:     TCTTGAACAATCGGCTTCCACCTAGAGAAAATACAAA                         ATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTAC
genomic: TCTTGAACAATCGGCTTCCACCTAGAGAAAATACAAAgtattcggca ... aaatttacagATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagataaaacttctttcataaaatgtctgactttgaaagctcttcaaatttacagATTAAGCTTCTTCCTGCATCCATGTGAAGGTTCATCGGTGCAGGTGGTTACACTAGGGAAACTTAGTGCACCCCGGATCTTAAGAGTTCACAAG
                        gtctgac  putative branch site (score: 3)
                                       ctcttca  putative PPT
          ttctttcataaaat  TA-rich tract