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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcttattctcgtttgttggtctgaaaattttccatcaaacgaaaatgatatctgggaactgattattttgttccatgtatttatctgtagTCTCTTATGCTTGTGACATCATTGAATCCG

Basic information

species Arabidopsis thaliana
transcript AT2G47510.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164229734|gb|EL973742.1|EL973742
EST:     TGAGGGGCATTGAGGCCAACAGAGAAAGAATCNCAAAGCTATTGCACGAG                         TCTCTTATGCTTGTGACATCATTGAATCCGAAA
genomic: TGAGGGGCATTGAGGCCAACAGAGAAAGAATCTCAAAGCTATTGCACGAGgtaggcttat ... ttatctgtagTCTCTTATGCTTGTGACATCATTGAATCCGAAA
EST: gi|124885429|gb|EH964331.1|EH964331
EST:     TGAGGGGCATTGAGGCCAACAGAGAAAGAATCTCAAAGCTATTGCACGAG                         TCTCTTATAGCTTGTGACATCATTGAATCCGAAA
genomic: TGAGGGGCATTGAGGCCAACAGAGAAAGAATCTCAAAGCTATTGCACGAGgtaggcttat ... ttatctgtagTCTCTTAT-GCTTGTGACATCATTGAATCCGAAA
EST: gi|124905456|gb|EH979536.1|EH979536
EST:     TCTCAAAGCTATTGCACGAG                         TCTCTTATGCTTGTGACATCATTGAATCCG
genomic: TCTCAAAGCTATTGCACGAGgtaggcttat ... ttatctgtagTCTCTTATGCTTGTGACATCATTGAATCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacgaaaatgatatctgggaactgattattttgttccatgtatttatctgtagTCTCTTATGCTTGTGACATCATTGAATCCG
                     aactgat  putative branch site (score: 3)
                                            tttatct  putative PPT
                          attattttgtt  TA-rich tract