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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctctcaaaacccgagaaaatagaacgaataactctttctttcatagcctagccatttaaatcgcaatgctgaaacttaataataaaggtgatctgttttggaatgggatcatattattagGTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTACCACGACCTGATGAACCGAAAAGGATCGATGT

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19450.1 (Arabidopsis thaliana), 3'ss of exon 15
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 15
gtatgctctcaaaacccgagaaaatagaacgaataactctttctttcatagcctagccatttaaatcgcaatgctgaaacttaataataaaggtgatctgttttggaatgggatcatattattagGTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTACCACGACCTGATGAACCGAAAAGGATCGATGT
                | |   ||||||      |  |    || ||| |     || | |  | |  || | ||    | | || | |    | |  |  | |   ||    |   | |   ||||||| || |||||||||||| |  | ||| ||||| | || || || |||||||||||||| |||||||| ||| ||||||| |||||||   | |   
---------------actacccaatagatt--tcagtttcacctatcaaaaaactgcaagtctagtttcagttct----cctcatcagagctctaaaatcatattatat----tttcaatgccagGTGGGAAATATGATCTTCTGGCTGTTTTTCAGCATTCTTGGTCAGCCAATGTGTGTGCTTCTATATTACCATGACTTGATGAATCGAAAAGAGACAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164059383|gb|ES013458.1|ES013458
EST:     CCTTTGGTCTTCATCACAAACTATCTACAGGAAAGGTTTGGCTCAACG                         GTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATG
genomic: CCTTTGGTCTTCATCACAAACTATCTACAGGAAAGGTTTGGCTCAACGgtatgctctc ... atattattagGTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgaaacttaataataaaggtgatctgttttggaatgggatcatattattagGTGGGGAACATGATCTTCTGGTTCATCTTCTGCATTTTCGGACAACCGATGTGTGTGCTTCTTTATTACCACGACCTGATGAACCGAAAAGGATCGATGT
        acttaat  putative branch site (score: 4)
      aaacttaataataaa  TA-rich tract